A B C D E F G H I K L M N O P R S T U V W X

A

activate(double[]) - Method in class org.neat4j.neat.core.NEATNeuron

If it is an input neuron, returns the input, else will run through the specified activation function.

activate(double) - Method in interface org.neat4j.neat.nn.core.ActivationFunction

activate(double) - Method in class org.neat4j.neat.nn.core.functions.LinearFunction

activate(double) - Method in class org.neat4j.neat.nn.core.functions.SigmoidFunction

Returns +/- 1

activate(double) - Method in class org.neat4j.neat.nn.core.functions.TanhFunction

activate(double[]) - Method in interface org.neat4j.neat.nn.core.Neuron

activationFunction() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

ActivationFunction - Interface in org.neat4j.neat.nn.core

activationFunction() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

addEnvironmentParameter(String, Object) - Method in class org.neat4j.neat.nn.core.LearningEnvironment

addIncomingSynapse(Synapse) - Method in class org.neat4j.neat.core.NEATNeuron

addLayerDescriptor(NeuralNetLayerDescriptor) - Method in class org.neat4j.neat.core.NEATNetDescriptor

addLayerDescriptor(NeuralNetLayerDescriptor) - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

addLayerDescriptor(NeuralNetLayerDescriptor) - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

addMatable(Chromosome) - Method in class org.neat4j.neat.ga.core.Specie

addNetworkOutput(NetworkOutput) - Method in class org.neat4j.neat.core.NEATNetOutputSet

addNetworkOutput(NetworkOutput) - Method in interface org.neat4j.neat.data.core.NetworkOutputSet

addNetworkOutput(NetworkOutput) - Method in class org.neat4j.neat.data.csv.CSVExpectedOutputSet

addSourceNeuron(NEATNeuron) - Method in class org.neat4j.neat.core.NEATNeuron

addSpecie(Specie) - Method in class org.neat4j.neat.ga.core.Species

addSpecieMember(Chromosome) - Method in class org.neat4j.neat.core.NEATSpecie

addSpecieMember(Chromosome) - Method in class org.neat4j.neat.ga.core.Specie

Adds the given individual to the specie iff it is compatible with the fitest member.

adjustFitness() - Method in class org.neat4j.neat.core.NEATSpecie

adjustFitness() - Method in class org.neat4j.neat.ga.core.Specie

ageFitness() - Method in class org.neat4j.neat.ga.core.Specie

Ages the specie fitness age if the best has not increased in fitness or the average fitness as a whole has not increased.

AIConfig - Interface in org.neat4j.core

AIConfigurationLoader - Interface in org.neat4j.core

AIController - Interface in org.neat4j.core

AIControllerFactory - Class in org.neat4j.core

ApplicationEngine - Interface in org.neat4j.neat.applications.core

Provides a generic AIController interface for an AI application module

assigGA(GeneticAlgorithm) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

assignConfig(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

averageFitness() - Method in class org.neat4j.neat.ga.core.Specie

B

bias() - Method in class org.neat4j.neat.core.NEATNeuron

bias() - Method in class org.neat4j.neat.core.NEATNodeGene

bias() - Method in interface org.neat4j.neat.nn.core.Neuron

C

calcSpecieOffspringCount(Specie, int, double) - Method in class org.neat4j.neat.ga.core.Species

Chromosome - Interface in org.neat4j.neat.ga.core

ChromosomeSet - Class in org.neat4j.neat.ga.core

ChromosomeSet() - Constructor for class org.neat4j.neat.ga.core.ChromosomeSet

ChromosomeSet(boolean) - Constructor for class org.neat4j.neat.ga.core.ChromosomeSet

clearSpecieMembers() - Method in class org.neat4j.neat.ga.core.Specie

cloneChromosome(Chromosome) - Method in class org.neat4j.neat.ga.core.Specie

cloneGenes(Gene[]) - Method in class org.neat4j.neat.ga.core.Specie

compareTo(Object) - Method in class org.neat4j.neat.core.NEATChromosome

compareTo(Object) - Method in class org.neat4j.neat.core.NEATSpecie

compatibilityScore(Chromosome, Chromosome, double, double, double) - Method in class org.neat4j.neat.core.NEATSpecieManager

configElement(String) - Method in interface org.neat4j.core.AIConfig

Allows access to given configuration values

configElement(String) - Method in class org.neat4j.neat.core.NEATConfig

containsMember(NEATChromosome) - Method in class org.neat4j.neat.ga.core.Specie

createAIController() - Method in class org.neat4j.core.AIControllerFactory

createCrossOver(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

createDescriptor(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

createExperiment() - Method in class org.neat4j.core.distribute.ExperimentServer

Gets the next experiment from the queue, if there are none left for the epoch, it will wait until the next epoch starts.

createFunction(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

createGeneticAlgorithm(GADescriptor) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

Creates a GA for NEAT evolution based on the descriptor

createLearnable(AIConfig, int) - Method in class org.neat4j.neat.core.control.NEATNetManager

createMutator(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

createNet(AIConfig) - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

createNetDescriptor() - Method in class org.neat4j.neat.core.control.NEATNetManager

createNetDescriptor(AIConfig) - Method in class org.neat4j.neat.core.control.NEATNetManager

createNetFromChromo(Chromosome) - Method in class org.neat4j.neat.core.NEATFitnessFunction

createNetStructure(NeuralNetDescriptor) - Method in class org.neat4j.neat.core.NEATNeuralNet

Updates the internal network structure

createNetStructure(NeuralNetDescriptor) - Method in interface org.neat4j.neat.nn.core.NeuralNet

createNN(NeuralNetDescriptor) - Method in class org.neat4j.neat.nn.core.NeuralNetFactory

createOperator(String) - Method in class org.neat4j.neat.ga.core.OperatorFactory

createParentSelector(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

createPopulation() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

Creates the initial population

createPopulation() - Method in class org.neat4j.neat.core.NEATPopulation

Creates an intial population

createPopulation() - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

createPopulation() - Method in interface org.neat4j.neat.ga.core.Population

createServer() - Method in class org.neat4j.core.distribute.ExperimentServer

Creates the server socket so incoming connections can be accepted

crossOver(ChromosomeSet) - Method in class org.neat4j.neat.core.xover.NEATCrossover

CrossOver - Interface in org.neat4j.neat.ga.core

crossOver(ChromosomeSet) - Method in interface org.neat4j.neat.ga.core.CrossOver

crossOverProbability() - Method in class org.neat4j.neat.core.NEATGADescriptor

crossOverProbability() - Method in interface org.neat4j.neat.ga.core.GADescriptor

CSV - Static variable in class org.neat4j.neat.data.core.DataLoaderFactory

CSVDataLoader - Class in org.neat4j.neat.data.csv

CSVDataLoader() - Constructor for class org.neat4j.neat.data.csv.CSVDataLoader

CSVDataLoader(String, int) - Constructor for class org.neat4j.neat.data.csv.CSVDataLoader

CSVDataSet - Class in org.neat4j.neat.data.csv

CSVDataSet() - Constructor for class org.neat4j.neat.data.csv.CSVDataSet

CSVDataSet(NetworkInputSet, ExpectedOutputSet) - Constructor for class org.neat4j.neat.data.csv.CSVDataSet

CSVExpectedOutput - Class in org.neat4j.neat.data.csv

CSVExpectedOutput(double[]) - Constructor for class org.neat4j.neat.data.csv.CSVExpectedOutput

CSVExpectedOutputSet - Class in org.neat4j.neat.data.csv

CSVExpectedOutputSet(ArrayList) - Constructor for class org.neat4j.neat.data.csv.CSVExpectedOutputSet

CSVInput - Class in org.neat4j.neat.data.csv

CSVInput(double[]) - Constructor for class org.neat4j.neat.data.csv.CSVInput

CSVInputSet - Class in org.neat4j.neat.data.csv

CSVInputSet(ArrayList) - Constructor for class org.neat4j.neat.data.csv.CSVInputSet

CSVNormaliser - Class in org.neat4j.neat.data.csv

CSVNormaliser() - Constructor for class org.neat4j.neat.data.csv.CSVNormaliser

D

database() - Static method in class org.neat4j.neat.core.InnovationDatabase

Singleton accessor

DataLoader - Interface in org.neat4j.neat.data.core

DataLoaderFactory - Class in org.neat4j.neat.data.core

dataSet(String, AIConfig, int) - Method in class org.neat4j.neat.core.control.NEATNetManager

derivative(double) - Method in interface org.neat4j.neat.nn.core.ActivationFunction

derivative(double) - Method in class org.neat4j.neat.nn.core.functions.LinearFunction

derivative(double) - Method in class org.neat4j.neat.nn.core.functions.SigmoidFunction

derivative(double) - Method in class org.neat4j.neat.nn.core.functions.TanhFunction

descriptor() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

descriptor() - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

discoverdBestMember() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

discoverdBestMember() - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

E

elitistSize() - Method in class org.neat4j.neat.core.NEATGADescriptor

elitistSize() - Method in interface org.neat4j.neat.ga.core.GADescriptor

equals(Object) - Method in class org.neat4j.neat.core.NEATLinkInnovation

equals(Object) - Method in class org.neat4j.neat.core.NEATNodeInnovation

error() - Method in interface org.neat4j.neat.nn.core.ErrorInformation

ErrorInformation - Interface in org.neat4j.neat.nn.core

euclideanDist(double[], double[]) - Static method in class org.neat4j.neat.utils.MathUtils

evaluate(Chromosome) - Method in class org.neat4j.neat.core.fitness.FOREXNEATFitnessFunction

evaluate(Chromosome) - Method in class org.neat4j.neat.core.fitness.FXTradingNEATFitnessFunction

evaluate(Chromosome) - Method in class org.neat4j.neat.core.fitness.MSENEATFitnessFunction

evaluate(Chromosome) - Method in interface org.neat4j.neat.ga.core.FitnessFunction

evaluationData() - Method in class org.neat4j.neat.ga.core.NeuralFitnessFunction

evolve() - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

Initiates an evaluation and evolution cycle.

execute(NetworkInput) - Method in class org.neat4j.neat.core.NEATNeuralNet

Exercises the network for the given input data set

execute(NetworkInput) - Method in interface org.neat4j.neat.nn.core.NeuralNet

ExpectedOutputSet - Interface in org.neat4j.neat.data.core

expectedOutputSet() - Method in interface org.neat4j.neat.data.core.NetworkDataSet

expectedOutputSet() - Method in class org.neat4j.neat.data.csv.CSVDataSet

Experiment - Class in org.neat4j.core.distribute

Experiment(int) - Constructor for class org.neat4j.core.distribute.Experiment

Creates a named experiment

ExperimentAgent - Class in org.neat4j.core.distribute

ExperimentAgent(String) - Constructor for class org.neat4j.core.distribute.ExperimentAgent

Creates a remote experiment agent that connects to the experiment server located at url

ExperimentNotRunException - Exception in org.neat4j.core.distribute

ExperimentNotRunException(String) - Constructor for exception org.neat4j.core.distribute.ExperimentNotRunException

ExperimentServer - Class in org.neat4j.core.distribute

ExperimentServer() - Constructor for class org.neat4j.core.distribute.ExperimentServer

F

factory() - Static method in class org.neat4j.neat.ga.core.OperatorFactory

featureSelectionEnabled() - Method in class org.neat4j.neat.core.NEATGADescriptor

findBestFromSpecies() - Method in class org.neat4j.neat.ga.core.Species

findBestMember() - Method in class org.neat4j.neat.ga.core.Specie

findLoader(String) - Method in class org.neat4j.neat.data.core.DataLoaderFactory

finishedExperiment(Experiment) - Method in class org.neat4j.core.distribute.ExperimentServer

When an agent finishes an experiment, experiment stats are updated.

fitness() - Method in class org.neat4j.neat.core.NEATChromosome

fitness() - Method in interface org.neat4j.neat.ga.core.Chromosome

FitnessFunction - Interface in org.neat4j.neat.ga.core

fitnessMultiplier() - Method in class org.neat4j.neat.core.NEATSpecie

fitnessMultiplier() - Method in class org.neat4j.neat.ga.core.Specie

FOREXNEATFitnessFunction - Class in org.neat4j.neat.core.fitness

FOREXNEATFitnessFunction(NeuralNet, NetworkDataSet) - Constructor for class org.neat4j.neat.core.fitness.FOREXNEATFitnessFunction

ForexNEATPredictionEngine - Class in org.neat4j.neat.applications.test

ForexNEATPredictionEngine() - Constructor for class org.neat4j.neat.applications.test.ForexNEATPredictionEngine

function() - Method in class org.neat4j.core.distribute.ExperimentServer

Makes the relevant fitness function available

function() - Method in class org.neat4j.neat.core.NEATNeuron

function() - Method in interface org.neat4j.neat.nn.core.Neuron

FXTradingNEATEngine - Class in org.neat4j.neat.applications.test

Forex Trading application based on a NEAT network.

FXTradingNEATEngine() - Constructor for class org.neat4j.neat.applications.test.FXTradingNEATEngine

FXTradingNEATFitnessFunction - Class in org.neat4j.neat.core.fitness

FXTradingNEATFitnessFunction(NeuralNet, NetworkDataSet) - Constructor for class org.neat4j.neat.core.fitness.FXTradingNEATFitnessFunction

G

GA - Static variable in class org.neat4j.neat.applications.core.NEATApplicationEngine

ga() - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

GADescriptor - Interface in org.neat4j.neat.ga.core

gaEvaluator() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

GALearnable - Class in org.neat4j.neat.nn.core.learning

GALearnable(LearningEnvironment) - Constructor for class org.neat4j.neat.nn.core.learning.GALearnable

GameApplicationEngine - Class in org.neat4j.neat.applications.core

Specialist AI application

GameApplicationEngine() - Constructor for class org.neat4j.neat.applications.core.GameApplicationEngine

gaPopulationSize() - Method in class org.neat4j.neat.core.NEATGADescriptor

gaPopulationSize() - Method in interface org.neat4j.neat.ga.core.GADescriptor

Gene - Interface in org.neat4j.neat.ga.core

geneAsNumber() - Method in class org.neat4j.neat.core.NEATFeatureGene

geneAsNumber() - Method in class org.neat4j.neat.core.NEATLinkGene

Not used within NEAT.

geneAsNumber() - Method in class org.neat4j.neat.core.NEATNodeGene

geneAsNumber() - Method in interface org.neat4j.neat.ga.core.Gene

geneAsString() - Method in class org.neat4j.neat.core.NEATFeatureGene

geneAsString() - Method in class org.neat4j.neat.core.NEATLinkGene

geneAsString() - Method in class org.neat4j.neat.core.NEATNodeGene

geneAsString() - Method in interface org.neat4j.neat.ga.core.Gene

generationBest() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

genes() - Method in class org.neat4j.neat.core.NEATChromosome

genes() - Method in interface org.neat4j.neat.ga.core.Chromosome

GeneticAlgorithm - Interface in org.neat4j.neat.ga.core

genoTypes() - Method in class org.neat4j.neat.core.NEATPopulation

genoTypes() - Method in interface org.neat4j.neat.ga.core.Population

getAgePenalty() - Method in class org.neat4j.neat.core.NEATGADescriptor

getAverageFitness() - Method in class org.neat4j.neat.ga.core.Specie

getCompatabilityChange() - Method in class org.neat4j.neat.core.NEATGADescriptor

getCurrentFitnessAge() - Method in class org.neat4j.neat.ga.core.Specie

getDepth() - Method in class org.neat4j.neat.core.NEATNodeGene

getDisjointCoeff() - Method in class org.neat4j.neat.core.NEATGADescriptor

getEleEventTime() - Method in class org.neat4j.neat.core.NEATGADescriptor

getEleSurvivalCount() - Method in class org.neat4j.neat.core.NEATGADescriptor

getExcessCoeff() - Method in class org.neat4j.neat.core.NEATGADescriptor

getExtraFeatureCount() - Method in class org.neat4j.neat.core.NEATGADescriptor

getFactory() - Static method in class org.neat4j.neat.nn.core.NeuralNetFactory

getFrom() - Method in class org.neat4j.neat.nn.core.Synapse

getFromId() - Method in class org.neat4j.neat.core.NEATLinkGene

getFromId() - Method in class org.neat4j.neat.core.NEATLinkInnovation

getInnovationNumber() - Method in class org.neat4j.neat.core.NEATFeatureGene

getInnovationNumber() - Method in interface org.neat4j.neat.core.NEATGene

getInnovationNumber() - Method in class org.neat4j.neat.core.NEATLinkGene

getInnovationNumber() - Method in class org.neat4j.neat.core.NEATNodeGene

getInputNodes() - Method in class org.neat4j.neat.core.NEATGADescriptor

getLinkInnovationId() - Method in class org.neat4j.neat.core.NEATNodeInnovation

getMaxBiasPerturb() - Method in class org.neat4j.neat.core.NEATGADescriptor

getMaxPerturb() - Method in class org.neat4j.neat.core.NEATGADescriptor

getMaxSpecieAge() - Method in class org.neat4j.neat.core.NEATGADescriptor

getNodeId() - Method in class org.neat4j.neat.core.NEATNodeInnovation

getOutputNodes() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPAddLink() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPAddNode() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPMutateBias() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPMutation() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPopSize() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPToggleLink() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPWeightReplaced() - Method in class org.neat4j.neat.core.NEATGADescriptor

getPXover() - Method in class org.neat4j.neat.core.NEATGADescriptor

getSpecieAgeThreshold() - Method in class org.neat4j.neat.core.NEATGADescriptor

getSpecieCount() - Method in class org.neat4j.neat.core.NEATGADescriptor

getSpecieId() - Method in class org.neat4j.neat.core.NEATChromosome

getSpecieYouthThreshold() - Method in class org.neat4j.neat.core.NEATGADescriptor

getSurvivalThreshold() - Method in class org.neat4j.neat.core.NEATGADescriptor

getSurvivalThreshold() - Method in class org.neat4j.neat.ga.core.Specie

getTerminationValue() - Method in class org.neat4j.neat.core.NEATGADescriptor

getThreshold() - Method in class org.neat4j.neat.core.NEATGADescriptor

getTo() - Method in class org.neat4j.neat.nn.core.Synapse

getToId() - Method in class org.neat4j.neat.core.NEATLinkGene

getToId() - Method in class org.neat4j.neat.core.NEATLinkInnovation

getType() - Method in class org.neat4j.neat.core.NEATNodeGene

getWeight() - Method in class org.neat4j.neat.core.NEATLinkGene

getWeight() - Method in class org.neat4j.neat.nn.core.Synapse

getWeightCoeff() - Method in class org.neat4j.neat.core.NEATGADescriptor

getYouthBoost() - Method in class org.neat4j.neat.core.NEATGADescriptor

H

handlerId() - Method in class org.neat4j.core.distribute.ExperimentAgent

hashCode() - Method in class org.neat4j.neat.core.NEATLinkInnovation

HIDDEN - Static variable in class org.neat4j.neat.core.NEATNodeGene

hiddenLayers() - Method in class org.neat4j.neat.core.NEATNeuralNet

hiddenLayers() - Method in interface org.neat4j.neat.nn.core.NeuralNet

hits - Static variable in class org.neat4j.neat.core.InnovationDatabase

I

id() - Method in class org.neat4j.core.distribute.Experiment

Experiment number

id() - Method in class org.neat4j.neat.core.NEATNeuron

id() - Method in class org.neat4j.neat.core.NEATNodeGene

id() - Method in class org.neat4j.neat.ga.core.Specie

incomingSynapses() - Method in class org.neat4j.neat.core.NEATNeuron

InitialisationFailedException - Exception in org.neat4j.core

InitialisationFailedException(String) - Constructor for exception org.neat4j.core.InitialisationFailedException

initialise(AIConfig) - Method in interface org.neat4j.core.AIController

Initialises the controller environment described by config

initialise(AIConfig) - Method in class org.neat4j.core.distribute.ExperimentServer

Intialises the server environment

initialise(AIConfig) - Method in class org.neat4j.neat.applications.core.GameApplicationEngine

initialise(AIConfig) - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

initialise(AIConfig) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

initialise(AIConfig) - Method in class org.neat4j.neat.core.control.NEATNetManager

initialiseInnovations(int, int, int, boolean, int) - Method in class org.neat4j.neat.core.InnovationDatabase

Creates popsize chromosomes ready for creating a NEAT network.

InnovationDatabase - Class in org.neat4j.neat.core

Provides the NEAT innovation database as described in Kenneth Stanley's NEAT papers The innovations are kept for the entire life of the run.

innovationId() - Method in class org.neat4j.neat.core.NEATFeatureInnovation

innovationId() - Method in interface org.neat4j.neat.core.NEATInnovation

innovationId() - Method in class org.neat4j.neat.core.NEATLinkInnovation

innovationId() - Method in class org.neat4j.neat.core.NEATNodeInnovation

INPUT - Static variable in class org.neat4j.neat.core.NEATNodeGene

inputAt(int) - Method in interface org.neat4j.neat.data.core.NetworkInputSet

inputAt(int) - Method in class org.neat4j.neat.data.csv.CSVInputSet

inputs() - Method in interface org.neat4j.neat.nn.core.LayerInput

inputSet() - Method in interface org.neat4j.neat.data.core.NetworkDataSet

inputSet() - Method in class org.neat4j.neat.data.csv.CSVDataSet

inputsIntoLayer() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

inputsIntoLayer() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

InvalidCrossoverFunction - Exception in org.neat4j.neat.core.xover

InvalidCrossoverFunction(String) - Constructor for exception org.neat4j.neat.core.xover.InvalidCrossoverFunction

InvalidFitnessFunction - Exception in org.neat4j.neat.core.fitness

InvalidFitnessFunction(String) - Constructor for exception org.neat4j.neat.core.fitness.InvalidFitnessFunction

InvalidMutatorFunction - Exception in org.neat4j.neat.core.mutators

InvalidMutatorFunction(String) - Constructor for exception org.neat4j.neat.core.mutators.InvalidMutatorFunction

InvalidParentSelectorFunction - Exception in org.neat4j.neat.core.pselectors

InvalidParentSelectorFunction(String) - Constructor for exception org.neat4j.neat.core.pselectors.InvalidParentSelectorFunction

isAvailable() - Method in class org.neat4j.core.distribute.ExperimentAgent

isCompatable(Chromosome, Chromosome) - Method in class org.neat4j.neat.core.NEATSpecie

isCompatable(Chromosome, Chromosome) - Method in class org.neat4j.neat.ga.core.Specie

isEleEvents() - Method in class org.neat4j.neat.core.NEATGADescriptor

isElististSet() - Method in class org.neat4j.neat.ga.core.ChromosomeSet

isEnabled() - Method in class org.neat4j.neat.core.NEATLinkGene

isEnabled() - Method in class org.neat4j.neat.nn.core.Synapse

isExtinct() - Method in class org.neat4j.neat.ga.core.Specie

isNaturalOrder() - Method in class org.neat4j.neat.core.NEATGADescriptor

isNaturalOrder() - Method in interface org.neat4j.neat.ga.core.GADescriptor

isOutputLayer() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

isOutputLayer() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

isRecurrencyAllowed() - Method in class org.neat4j.neat.core.NEATGADescriptor

isRecurrent() - Method in class org.neat4j.neat.core.NEATLinkGene

isRecurrent() - Method in class org.neat4j.neat.core.NEATNetDescriptor

isRecurrent() - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

isRecurrent() - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

isSelfRecurrent() - Method in class org.neat4j.neat.core.NEATLinkGene

K

keepBestEver() - Method in class org.neat4j.neat.core.NEATGADescriptor

L

lastActivation() - Method in class org.neat4j.neat.core.NEATNeuron

lastActivation() - Method in interface org.neat4j.neat.nn.core.Neuron

lastBiasDelta() - Method in class org.neat4j.neat.core.NEATNeuron

lastBiasDelta() - Method in interface org.neat4j.neat.nn.core.Neuron

lastWeightDeltas() - Method in class org.neat4j.neat.core.NEATNeuron

lastWeightDeltas() - Method in interface org.neat4j.neat.nn.core.Neuron

layerDescriptor() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayer

layerDescriptors() - Method in class org.neat4j.neat.core.NEATNetDescriptor

layerDescriptors() - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

layerDescriptors() - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

layerId() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

layerId() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

LayerInput - Interface in org.neat4j.neat.nn.core

layerNeurons() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayer

LayerOutput - Interface in org.neat4j.neat.nn.core

layerSize() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

layerSize() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

learnable() - Method in class org.neat4j.neat.core.NEATNetDescriptor

learnable() - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

Learnable - Interface in org.neat4j.neat.nn.core

learnable() - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

LearnableException - Exception in org.neat4j.neat.core.control

LearnableException(String) - Constructor for exception org.neat4j.neat.core.control.LearnableException

learningEnvironment() - Method in interface org.neat4j.neat.nn.core.Learnable

learningEnvironment() - Method in class org.neat4j.neat.nn.core.learning.GALearnable

LearningEnvironment - Class in org.neat4j.neat.nn.core

LearningEnvironment() - Constructor for class org.neat4j.neat.nn.core.LearningEnvironment

learningParameter(String) - Method in class org.neat4j.neat.nn.core.LearningEnvironment

LinearFunction - Class in org.neat4j.neat.nn.core.functions

LinearFunction() - Constructor for class org.neat4j.neat.nn.core.functions.LinearFunction

loadConfig(String) - Method in interface org.neat4j.core.AIConfigurationLoader

Loads a configuration file from location, and creates an AIConfig object that holds the full configuration

loadConfig(String) - Method in class org.neat4j.neat.core.NEATLoader

loadData(String, int, int) - Method in interface org.neat4j.neat.data.core.DataLoader

loadData(String, int, int) - Method in class org.neat4j.neat.data.csv.CSVDataLoader

loaderFactory() - Static method in class org.neat4j.neat.data.core.DataLoaderFactory

LoaderNotAvailableException - Exception in org.neat4j.neat.data.core

LoaderNotAvailableException(String) - Constructor for exception org.neat4j.neat.data.core.LoaderNotAvailableException

M

main(String[]) - Static method in class org.neat4j.core.distribute.ExperimentServer

main(String[]) - Static method in class org.neat4j.core.distribute.RemoteExperimentAgentClient

main(String[]) - Static method in class org.neat4j.neat.applications.test.ForexNEATPredictionEngine

main(String[]) - Static method in class org.neat4j.neat.applications.test.FXTradingNEATEngine

main(String[]) - Static method in class org.neat4j.neat.applications.test.MSENEATPredictionEngine

main(String[]) - Static method in class org.neat4j.neat.applications.train.NEATGATrainingManager

managedNet() - Method in class org.neat4j.neat.core.control.NEATNetManager

MathUtils - Class in org.neat4j.neat.utils

maxFittnessAge() - Method in class org.neat4j.neat.ga.core.Specie

misses - Static variable in class org.neat4j.neat.core.InnovationDatabase

ModifiableInput - Class in org.neat4j.neat.data.modify

ModifiableInput(NetworkInput) - Constructor for class org.neat4j.neat.data.modify.ModifiableInput

ModifiableNetworkInput - Interface in org.neat4j.neat.data.core

modifyBias(double, double, boolean) - Method in class org.neat4j.neat.core.NEATNeuron

modifyBias(double, double, boolean) - Method in interface org.neat4j.neat.nn.core.Neuron

modifyFirstInput(double) - Method in interface org.neat4j.neat.data.core.ModifiableNetworkInput

modifyFirstInput(double) - Method in class org.neat4j.neat.data.modify.ModifiableInput

modifyInput(double, int) - Method in interface org.neat4j.neat.data.core.ModifiableNetworkInput

modifyInput(double, int) - Method in class org.neat4j.neat.data.modify.ModifiableInput

modifyLastInput(double) - Method in interface org.neat4j.neat.data.core.ModifiableNetworkInput

modifyLastInput(double) - Method in class org.neat4j.neat.data.modify.ModifiableInput

modifyWeights(double[], double[], boolean) - Method in class org.neat4j.neat.core.NEATNeuron

modifyWeights(double[], double[], boolean) - Method in interface org.neat4j.neat.nn.core.Neuron

MSENEATFitnessFunction - Class in org.neat4j.neat.core.fitness

MSENEATFitnessFunction(NeuralNet, NetworkDataSet) - Constructor for class org.neat4j.neat.core.fitness.MSENEATFitnessFunction

MSENEATPredictionEngine - Class in org.neat4j.neat.applications.test

MSENEATPredictionEngine() - Constructor for class org.neat4j.neat.applications.test.MSENEATPredictionEngine

mutate(Chromosome) - Method in class org.neat4j.neat.core.mutators.NEATMutator

Mutates the chromsome based on the set of probabilities.

mutate(Chromosome) - Method in interface org.neat4j.neat.ga.core.Mutator

mutationProbability() - Method in class org.neat4j.neat.core.NEATGADescriptor

mutationProbability() - Method in interface org.neat4j.neat.ga.core.GADescriptor

Mutator - Interface in org.neat4j.neat.ga.core

N

NEAT - Class in org.neat4j.neat.core.control

NEAT() - Constructor for class org.neat4j.neat.core.control.NEAT

NEATApplicationEngine - Class in org.neat4j.neat.applications.core

Provides bare bones NEAT application

NEATApplicationEngine() - Constructor for class org.neat4j.neat.applications.core.NEATApplicationEngine

NEATChromosome - Class in org.neat4j.neat.core

NEAT specific chromosome

NEATChromosome(Gene[]) - Constructor for class org.neat4j.neat.core.NEATChromosome

NEATConfig - Class in org.neat4j.neat.core

Holds an object representation of the NEAT config

NEATConfig(HashMap) - Constructor for class org.neat4j.neat.core.NEATConfig

NEATConfig() - Constructor for class org.neat4j.neat.core.NEATConfig

NEATCrossover - Class in org.neat4j.neat.core.xover

NEATCrossover() - Constructor for class org.neat4j.neat.core.xover.NEATCrossover

NEATFeatureGene - Class in org.neat4j.neat.core

Contains gene information for extra features

NEATFeatureGene(int, double) - Constructor for class org.neat4j.neat.core.NEATFeatureGene

NEATFeatureInnovation - Class in org.neat4j.neat.core

Extra Feature innovation database entry.

NEATFeatureInnovation() - Constructor for class org.neat4j.neat.core.NEATFeatureInnovation

NEATFitnessFunction - Class in org.neat4j.neat.core

Provides common behaviour for all NEAT Fitness functions which should all extnd this class

NEATFitnessFunction(NeuralNet, NetworkDataSet) - Constructor for class org.neat4j.neat.core.NEATFitnessFunction

NEATFrame - Class in org.neat4j.neat.applications.gui

Provides a rudimentary visualisation of a NEAT network.

NEATFrame(NEATNeuralNet) - Constructor for class org.neat4j.neat.applications.gui.NEATFrame

NEATGADescriptor - Class in org.neat4j.neat.core

NEAT GA Descriptor - provides the behaviour environment for the NEAT GA.

NEATGADescriptor() - Constructor for class org.neat4j.neat.core.NEATGADescriptor

NEATGATrainingManager - Class in org.neat4j.neat.applications.train

Training control for a NEAT network based on given configuration.

NEATGATrainingManager() - Constructor for class org.neat4j.neat.applications.train.NEATGATrainingManager

NEATGene - Interface in org.neat4j.neat.core

Extension of the Gene interface to provide more specific NEAT behaviour

NEATGeneticAlgorithm - Class in org.neat4j.neat.core

NEATGeneticAlgorithm(NEATGADescriptor) - Constructor for class org.neat4j.neat.core.NEATGeneticAlgorithm

Creates a NEAT GA with behaviour defined by the descriptor

NEATInnovation - Interface in org.neat4j.neat.core

Innovation database entry

NEATLinkGene - Class in org.neat4j.neat.core

NEATLinkGene(int, boolean, int, int, double) - Constructor for class org.neat4j.neat.core.NEATLinkGene

Creates the gene based on the params

NEATLinkInnovation - Class in org.neat4j.neat.core

NEATLinkInnovation(int, int) - Constructor for class org.neat4j.neat.core.NEATLinkInnovation

NEATLoader - Class in org.neat4j.neat.core

NEATLoader() - Constructor for class org.neat4j.neat.core.NEATLoader

NEATMutator - Class in org.neat4j.neat.core.mutators

NEATMutator() - Constructor for class org.neat4j.neat.core.mutators.NEATMutator

NEATMutator(double, double, double) - Constructor for class org.neat4j.neat.core.mutators.NEATMutator

NEATNetDescriptor - Class in org.neat4j.neat.core

NEATNetDescriptor(int, Learnable) - Constructor for class org.neat4j.neat.core.NEATNetDescriptor

NEATNetLayerDescriptor - Class in org.neat4j.neat.core

NEATNetLayerDescriptor(ActivationFunction, int, int, int) - Constructor for class org.neat4j.neat.core.NEATNetLayerDescriptor

NEATNetLayerDescriptor(ActivationFunction, int, int, int, boolean, boolean) - Constructor for class org.neat4j.neat.core.NEATNetLayerDescriptor

NEATNetManager - Class in org.neat4j.neat.core.control

NEATNetManager() - Constructor for class org.neat4j.neat.core.control.NEATNetManager

NEATNetOutput - Class in org.neat4j.neat.core

NEATNetOutput(double[]) - Constructor for class org.neat4j.neat.core.NEATNetOutput

NEATNetOutputSet - Class in org.neat4j.neat.core

NEATNetOutputSet() - Constructor for class org.neat4j.neat.core.NEATNetOutputSet

NEATNeuralNet - Class in org.neat4j.neat.core

NEATNeuralNet() - Constructor for class org.neat4j.neat.core.NEATNeuralNet

NEATNeuralNetDescriptor - Class in org.neat4j.neat.core

NEATNeuralNetDescriptor(int, Learnable) - Constructor for class org.neat4j.neat.core.NEATNeuralNetDescriptor

NEATNeuralNetDescriptor(int, Learnable, boolean) - Constructor for class org.neat4j.neat.core.NEATNeuralNetDescriptor

NEATNeuron - Class in org.neat4j.neat.core

NEATNeuron(ActivationFunction, int, int) - Constructor for class org.neat4j.neat.core.NEATNeuron

NEATNodeGene - Class in org.neat4j.neat.core

NEATNodeGene(int, int, double, int, double) - Constructor for class org.neat4j.neat.core.NEATNodeGene

NEATNodeInnovation - Class in org.neat4j.neat.core

NEATNodeInnovation() - Constructor for class org.neat4j.neat.core.NEATNodeInnovation

NEATNodeInnovation(int) - Constructor for class org.neat4j.neat.core.NEATNodeInnovation

NEATPopulation - Class in org.neat4j.neat.core

NEATPopulation(int, int, int, int, boolean, int) - Constructor for class org.neat4j.neat.core.NEATPopulation

NEATPopulation(int, int, int, int, boolean) - Constructor for class org.neat4j.neat.core.NEATPopulation

NEATSpecie - Class in org.neat4j.neat.core

NEATSpecie(double, double, double, double, int) - Constructor for class org.neat4j.neat.core.NEATSpecie

NEATSpecieManager - Class in org.neat4j.neat.core

neatStructure() - Method in class org.neat4j.neat.core.NEATNetDescriptor

net() - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

net() - Method in class org.neat4j.neat.ga.core.NeuralFitnessFunction

netData() - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

netDescriptor() - Method in class org.neat4j.neat.core.NEATNeuralNet

netDescriptor() - Method in interface org.neat4j.neat.nn.core.NeuralNet

netID() - Method in class org.neat4j.neat.core.NEATNeuralNet

netID() - Method in interface org.neat4j.neat.nn.core.NeuralNet

NetworkDataSet - Interface in org.neat4j.neat.data.core

NetworkInput - Interface in org.neat4j.neat.data.core

NetworkInputSet - Interface in org.neat4j.neat.data.core

NetworkOutput - Interface in org.neat4j.neat.data.core

NetworkOutputSet - Interface in org.neat4j.neat.data.core

NeuralFitnessFunction - Class in org.neat4j.neat.ga.core

NeuralFitnessFunction(NeuralNet, NetworkDataSet) - Constructor for class org.neat4j.neat.ga.core.NeuralFitnessFunction

NeuralNet - Interface in org.neat4j.neat.nn.core

NeuralNetDescriptor - Interface in org.neat4j.neat.nn.core

NeuralNetFactory - Class in org.neat4j.neat.nn.core

NeuralNetLayer - Interface in org.neat4j.neat.nn.core

NeuralNetLayerDescriptor - Interface in org.neat4j.neat.nn.core

neuralNetType() - Method in class org.neat4j.neat.core.NEATNetDescriptor

neuralNetType() - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

neuralNetType() - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

NeuralNetType - Interface in org.neat4j.neat.nn.core

Neuron - Interface in org.neat4j.neat.nn.core

neuronAt(int, int) - Method in class org.neat4j.neat.core.NEATNeuralNet

neuronAt(int, int) - Method in interface org.neat4j.neat.nn.core.NeuralNet

neuronDepth() - Method in class org.neat4j.neat.core.NEATNeuron

neurons() - Method in class org.neat4j.neat.core.NEATNeuralNet

neuronType() - Method in class org.neat4j.neat.core.NEATNeuron

nextChromosome() - Method in class org.neat4j.neat.ga.core.ChromosomeSet

nextClampedDouble(double, double) - Static method in class org.neat4j.neat.utils.MathUtils

nextDouble() - Static method in class org.neat4j.neat.utils.MathUtils

nextInput() - Method in interface org.neat4j.neat.data.core.NetworkInputSet

nextInput() - Method in class org.neat4j.neat.data.csv.CSVInputSet

nextOutput() - Method in class org.neat4j.neat.core.NEATNetOutputSet

nextOutput() - Method in interface org.neat4j.neat.data.core.NetworkOutputSet

nextOutput() - Method in class org.neat4j.neat.data.csv.CSVExpectedOutputSet

Wraps round to beginning

nextPlusMinusOne() - Static method in class org.neat4j.neat.utils.MathUtils

nodesSelfRecurrent() - Method in class org.neat4j.neat.core.NEATNetLayerDescriptor

nodesSelfRecurrent() - Method in interface org.neat4j.neat.nn.core.NeuralNetLayerDescriptor

normalise(NetworkDataSet) - Method in interface org.neat4j.neat.data.core.Normaliser

normalise(NetworkDataSet) - Method in class org.neat4j.neat.data.csv.CSVNormaliser

Normaliser - Interface in org.neat4j.neat.data.core

numInputs() - Method in class org.neat4j.neat.core.NEATNetDescriptor

numInputs() - Method in class org.neat4j.neat.core.NEATNeuralNetDescriptor

numInputs() - Method in interface org.neat4j.neat.nn.core.NeuralNetDescriptor

O

Operator - Interface in org.neat4j.neat.ga.core

OperatorFactory - Class in org.neat4j.neat.ga.core

OperatorInformation - Interface in org.neat4j.neat.ga.core

org.neat4j.core - package org.neat4j.core

org.neat4j.core.distribute - package org.neat4j.core.distribute

org.neat4j.neat.applications.core - package org.neat4j.neat.applications.core

org.neat4j.neat.applications.gui - package org.neat4j.neat.applications.gui

org.neat4j.neat.applications.test - package org.neat4j.neat.applications.test

org.neat4j.neat.applications.train - package org.neat4j.neat.applications.train

org.neat4j.neat.core - package org.neat4j.neat.core

org.neat4j.neat.core.control - package org.neat4j.neat.core.control

org.neat4j.neat.core.fitness - package org.neat4j.neat.core.fitness

org.neat4j.neat.core.mutators - package org.neat4j.neat.core.mutators

org.neat4j.neat.core.pselectors - package org.neat4j.neat.core.pselectors

org.neat4j.neat.core.xover - package org.neat4j.neat.core.xover

org.neat4j.neat.data.core - package org.neat4j.neat.data.core

org.neat4j.neat.data.csv - package org.neat4j.neat.data.csv

org.neat4j.neat.data.modify - package org.neat4j.neat.data.modify

org.neat4j.neat.ga.core - package org.neat4j.neat.ga.core

org.neat4j.neat.nn.core - package org.neat4j.neat.nn.core

org.neat4j.neat.nn.core.functions - package org.neat4j.neat.nn.core.functions

org.neat4j.neat.nn.core.learning - package org.neat4j.neat.nn.core.learning

org.neat4j.neat.utils - package org.neat4j.neat.utils

OUTPUT - Static variable in class org.neat4j.neat.core.NEATNodeGene

outputAt(int) - Method in interface org.neat4j.neat.data.core.ExpectedOutputSet

outputAt(int) - Method in class org.neat4j.neat.data.csv.CSVExpectedOutputSet

outputLayer() - Method in class org.neat4j.neat.core.NEATNeuralNet

outputLayer() - Method in interface org.neat4j.neat.nn.core.NeuralNet

outputNeurons() - Method in class org.neat4j.neat.core.NEATNeuralNet

outputs() - Method in interface org.neat4j.neat.nn.core.LayerOutput

P

ParentSelector - Interface in org.neat4j.neat.ga.core

pattern() - Method in interface org.neat4j.neat.data.core.NetworkInput

pattern() - Method in class org.neat4j.neat.data.csv.CSVInput

pattern() - Method in class org.neat4j.neat.data.modify.ModifiableInput

performExperiment() - Method in class org.neat4j.core.distribute.Experiment

runs the experiment

pluginCrossOver(CrossOver) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

pluginCrossOver(CrossOver) - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

pluginFitnessFunction(FitnessFunction) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

pluginFitnessFunction(FitnessFunction) - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

pluginMutator(Mutator) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

pluginMutator(Mutator) - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

pluginParentSelector(ParentSelector) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

pluginParentSelector(ParentSelector) - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

population() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

population() - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

Population - Interface in org.neat4j.neat.ga.core

preProcess(NetworkDataSet) - Method in interface org.neat4j.neat.data.core.PreProcessor

PreProcessor - Interface in org.neat4j.neat.data.core

produceOffspring(int, Mutator, ParentSelector, CrossOver) - Method in class org.neat4j.neat.core.NEATSpecie

produceOffspring(int, Mutator, ParentSelector, CrossOver) - Method in class org.neat4j.neat.ga.core.Specie

propogate(LayerInput) - Method in interface org.neat4j.neat.nn.core.NeuralNetLayer

R

readObject(String) - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

Reads a saved chromosome from fileName

RemoteExperimentAgentClient - Class in org.neat4j.core.distribute

RemoteExperimentAgentClient() - Constructor for class org.neat4j.core.distribute.RemoteExperimentAgentClient

removeExtinctSpecies(NEATChromosome) - Method in class org.neat4j.neat.ga.core.Species

removeInputAt(int) - Method in interface org.neat4j.neat.data.core.NetworkInputSet

removeInputAt(int) - Method in class org.neat4j.neat.data.csv.CSVInputSet

removeNetworkOutput(int) - Method in class org.neat4j.neat.core.NEATNetOutputSet

removeNetworkOutput(int) - Method in interface org.neat4j.neat.data.core.NetworkOutputSet

removeNetworkOutput(int) - Method in class org.neat4j.neat.data.csv.CSVExpectedOutputSet

reprieve() - Method in class org.neat4j.neat.ga.core.Specie

requiredChromosomeSize() - Method in class org.neat4j.neat.core.NEATFitnessFunction

requiredChromosomeSize() - Method in interface org.neat4j.neat.ga.core.FitnessFunction

requiredWeightCount() - Method in class org.neat4j.neat.core.NEATNeuralNet

requiredWeightCount() - Method in interface org.neat4j.neat.nn.core.NeuralNet

resetSpecie(double) - Method in class org.neat4j.neat.ga.core.Specie

Clears all memebers from the species and checks to see if it is extinct.

resetSpecies(double) - Method in class org.neat4j.neat.ga.core.Species

Clears down all the current species

result() - Method in class org.neat4j.core.distribute.Experiment

Returns the experiment result if it has been set up correctly and run

returnFailedExperimentToPool(Experiment) - Method in class org.neat4j.core.distribute.ExperimentServer

If a remote Experiment Agent fails to complete an experiment, it must be put back on the queue to be re-assigned

run() - Method in class org.neat4j.core.distribute.ExperimentAgent

Implementation of Runnable

runAgent() - Method in class org.neat4j.core.distribute.ExperimentAgent

Controller of the agent.

runApplication() - Method in interface org.neat4j.neat.applications.core.ApplicationEngine

runs defined application

runApplication() - Method in class org.neat4j.neat.applications.core.GameApplicationEngine

runApplication() - Method in class org.neat4j.neat.applications.test.ForexNEATPredictionEngine

runApplication() - Method in class org.neat4j.neat.applications.test.FXTradingNEATEngine

runApplication() - Method in class org.neat4j.neat.applications.test.MSENEATPredictionEngine

runEpoch() - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

Runs an evaluation and evolution cycle

runEpoch() - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

runEvolutionCycle(Chromosome[]) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

Runs an evolution cycle on the given population

S

save(String, Chromosome) - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

save(String) - Method in class org.neat4j.neat.core.control.NEATNetManager

saveBest() - Method in class org.neat4j.neat.applications.train.NEATGATrainingManager

Saves the best candidate of the generation

savePopulationState(String) - Method in class org.neat4j.neat.core.NEATGeneticAlgorithm

Saves the entire population.

savePopulationState(String) - Method in interface org.neat4j.neat.ga.core.GeneticAlgorithm

seedNet(double[]) - Method in class org.neat4j.neat.core.NEATNeuralNet

seedNet(double[]) - Method in interface org.neat4j.neat.nn.core.NeuralNet

selectParents(Population, boolean) - Method in class org.neat4j.neat.core.pselectors.TournamentSelector

selectParents(Specie, boolean) - Method in class org.neat4j.neat.core.pselectors.TournamentSelector

selectParents(Chromosome[], boolean) - Method in class org.neat4j.neat.core.pselectors.TournamentSelector

selectParents(Population, boolean) - Method in interface org.neat4j.neat.ga.core.ParentSelector

selectParents(Specie, boolean) - Method in interface org.neat4j.neat.ga.core.ParentSelector

selectParents(Chromosome[], boolean) - Method in interface org.neat4j.neat.ga.core.ParentSelector

selectSpecie(int) - Method in class org.neat4j.neat.ga.core.Species

setAgePenalty(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setAgePenalty(double) - Method in class org.neat4j.neat.core.NEATSpecie

setAgeThreshold(int) - Method in class org.neat4j.neat.core.NEATSpecie

setBias(double) - Method in class org.neat4j.neat.core.NEATNodeGene

setBiasPerturb(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setCompatabilityChange(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setDepth(double) - Method in class org.neat4j.neat.core.NEATNodeGene

setDisjointCoeff(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setEleEvents(boolean) - Method in class org.neat4j.neat.core.NEATGADescriptor

setEleEventTime(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setEleSurvivalCount(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setElitismStrategy(int) - Method in class org.neat4j.neat.core.pselectors.TournamentSelector

setElitismStrategy(int) - Method in interface org.neat4j.neat.ga.core.ParentSelector

setEnabled(boolean) - Method in class org.neat4j.neat.core.NEATLinkGene

setEnabled(boolean) - Method in class org.neat4j.neat.nn.core.Synapse

setExcessCoeff(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setExtinct() - Method in class org.neat4j.neat.ga.core.Specie

setExtraFeatureCount(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setFactor(double) - Method in class org.neat4j.neat.nn.core.functions.SigmoidFunction

setFeatureSelection(boolean) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setFeatureSelection(boolean) - Method in class org.neat4j.neat.core.NEATGADescriptor

setFromId(int) - Method in class org.neat4j.neat.core.NEATLinkGene

setHandlerId(int) - Method in class org.neat4j.core.distribute.ExperimentAgent

setInnovationId(int) - Method in class org.neat4j.neat.core.NEATFeatureInnovation

setInnovationId(int) - Method in interface org.neat4j.neat.core.NEATInnovation

setInnovationId(int) - Method in class org.neat4j.neat.core.NEATLinkInnovation

setInnovationId(int) - Method in class org.neat4j.neat.core.NEATNodeInnovation

setInputNodes(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setKeepBestEver(boolean) - Method in class org.neat4j.neat.core.NEATGADescriptor

setMaxBiasPerturb(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setMaxFitnessAge(int) - Method in class org.neat4j.neat.ga.core.Specie

setMaxPerturb(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setMaxSpecieAge(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setNaturalOrder(boolean) - Method in class org.neat4j.neat.core.NEATChromosome

setNaturalOrder(boolean) - Method in class org.neat4j.neat.core.NEATGADescriptor

setNet(NeuralNet) - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

setNetData(NetworkDataSet) - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

setNeuronDepth(int) - Method in class org.neat4j.neat.core.NEATNeuron

setNodeId(int) - Method in class org.neat4j.neat.core.NEATNodeInnovation

setOrderStrategy(boolean) - Method in class org.neat4j.neat.core.pselectors.TournamentSelector

setOrderStrategy(boolean) - Method in interface org.neat4j.neat.ga.core.ParentSelector

setOutputNodes(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPAddLink(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPAddLink(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPAddNode(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPAddNode(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPerturb(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPMutateBias(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPMutateBias(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPMutation(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPopSize(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPopulationSize(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPPerturb(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setProbability(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setProbability(double) - Method in class org.neat4j.neat.core.xover.NEATCrossover

setProbability(double) - Method in interface org.neat4j.neat.ga.core.CrossOver

setProbability(double) - Method in interface org.neat4j.neat.ga.core.Mutator

setPToggle(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPToggleLink(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPWeightReplaced(double) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setPWeightReplaced(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setPXover(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setRecurrencyAllowed(boolean) - Method in class org.neat4j.neat.core.mutators.NEATMutator

setRecurrencyAllowed(boolean) - Method in class org.neat4j.neat.core.NEATGADescriptor

setRecurrent(boolean) - Method in class org.neat4j.neat.core.NEATLinkGene

setSelfRecurrent(boolean) - Method in class org.neat4j.neat.core.NEATLinkGene

setSigmoidFactor(double) - Method in class org.neat4j.neat.core.NEATNodeGene

setSpecieAge(int) - Method in class org.neat4j.neat.core.NEATSpecie

setSpecieAgeThreshold(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setSpecieCount(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setSpecieId(int) - Method in class org.neat4j.neat.core.NEATChromosome

setSpecieYouthThreshold(int) - Method in class org.neat4j.neat.core.NEATGADescriptor

setSurvivalThreshold(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setSurvivalThreshold(double) - Method in class org.neat4j.neat.ga.core.Specie

setTerminationValue(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setThreshold(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setToId(int) - Method in class org.neat4j.neat.core.NEATLinkGene

setupExperiment(Chromosome) - Method in class org.neat4j.core.distribute.Experiment

Assigns the individual chromosome to run the experiment

setupFunction(NEATFitnessFunction) - Method in class org.neat4j.core.distribute.Experiment

Sets up the Experiment execution environment

setWeight(double) - Method in class org.neat4j.neat.core.NEATLinkGene

setWeight(double) - Method in class org.neat4j.neat.nn.core.Synapse

setWeightCoeff(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setYouthBoost(double) - Method in class org.neat4j.neat.core.NEATGADescriptor

setYouthBoost(double) - Method in class org.neat4j.neat.core.NEATSpecie

setYouthThreshold(int) - Method in class org.neat4j.neat.core.NEATSpecie

shareFitness() - Method in class org.neat4j.neat.ga.core.Species

showNet() - Method in class org.neat4j.neat.applications.core.NEATApplicationEngine

showNet() - Method in class org.neat4j.neat.applications.gui.NEATFrame

showNet() - Method in class org.neat4j.neat.applications.test.ForexNEATPredictionEngine

showNet() - Method in class org.neat4j.neat.applications.test.FXTradingNEATEngine

showNet() - Method in class org.neat4j.neat.applications.test.MSENEATPredictionEngine

sigmoidFactor() - Method in class org.neat4j.neat.core.NEATNodeGene

SigmoidFunction - Class in org.neat4j.neat.nn.core.functions

SigmoidFunction() - Constructor for class org.neat4j.neat.nn.core.functions.SigmoidFunction

SigmoidFunction(double) - Constructor for class org.neat4j.neat.nn.core.functions.SigmoidFunction

size() - Method in class org.neat4j.neat.core.NEATChromosome

size() - Method in class org.neat4j.neat.core.NEATNetOutputSet

size() - Method in interface org.neat4j.neat.data.core.NetworkInputSet

size() - Method in interface org.neat4j.neat.data.core.NetworkOutputSet

size() - Method in class org.neat4j.neat.data.csv.CSVExpectedOutputSet

size() - Method in class org.neat4j.neat.data.csv.CSVInputSet

size() - Method in interface org.neat4j.neat.ga.core.Chromosome

sourceNeurons() - Method in class org.neat4j.neat.core.NEATNeuron

Specie - Class in org.neat4j.neat.ga.core

Specie(double, int) - Constructor for class org.neat4j.neat.ga.core.Specie

specieAge() - Method in class org.neat4j.neat.core.NEATSpecie

specieList() - Method in class org.neat4j.neat.ga.core.Species

specieManager() - Static method in class org.neat4j.neat.core.NEATSpecieManager

specieMembers() - Method in class org.neat4j.neat.ga.core.Specie

specieOffspring(int, Mutator, ParentSelector, CrossOver) - Method in class org.neat4j.neat.ga.core.Specie

Creates offspring from the specie.

Species - Class in org.neat4j.neat.ga.core

Species() - Constructor for class org.neat4j.neat.ga.core.Species

specieThreshold() - Method in class org.neat4j.neat.ga.core.Specie

submitLinkInnovation(int, int) - Method in class org.neat4j.neat.core.InnovationDatabase

Submits a link insertion mutation to the database.

submitNodeInnovation(NEATLinkGene) - Method in class org.neat4j.neat.core.InnovationDatabase

Submits a node insertion mutation to the database.

Synapse - Class in org.neat4j.neat.nn.core

Synapse(Neuron, Neuron, double) - Constructor for class org.neat4j.neat.nn.core.Synapse

T

TanhFunction - Class in org.neat4j.neat.nn.core.functions

TanhFunction() - Constructor for class org.neat4j.neat.nn.core.functions.TanhFunction

teach(NeuralNet) - Method in interface org.neat4j.neat.nn.core.Learnable

teach(NeuralNet) - Method in class org.neat4j.neat.nn.core.learning.GALearnable

toString() - Method in class org.neat4j.neat.data.csv.CSVExpectedOutput

toString() - Method in class org.neat4j.neat.data.csv.CSVInput

toString() - Method in class org.neat4j.neat.data.modify.ModifiableInput

totalAvSpeciesFitness() - Method in class org.neat4j.neat.ga.core.Species

TournamentSelector - Class in org.neat4j.neat.core.pselectors

TournamentSelector() - Constructor for class org.neat4j.neat.core.pselectors.TournamentSelector

type() - Method in class org.neat4j.neat.core.NEATFeatureInnovation

type() - Method in interface org.neat4j.neat.core.NEATInnovation

type() - Method in class org.neat4j.neat.core.NEATLinkInnovation

type() - Method in class org.neat4j.neat.core.NEATNodeInnovation

type() - Method in interface org.neat4j.neat.ga.core.OperatorInformation

U

updateChromosome(Gene[]) - Method in class org.neat4j.neat.core.NEATChromosome

updateChromosome(Gene[]) - Method in interface org.neat4j.neat.ga.core.Chromosome

updateConfig(String, String) - Method in interface org.neat4j.core.AIConfig

Allows updating of configuration values

updateConfig(String, String) - Method in class org.neat4j.neat.core.NEATConfig

updateFitness(double) - Method in class org.neat4j.neat.core.NEATChromosome

updateFitness(double) - Method in interface org.neat4j.neat.ga.core.Chromosome

updateNetStructure() - Method in class org.neat4j.neat.core.NEATNeuralNet

Generates a neural network structure based on the network descriptor

updatePopulation(Chromosome[]) - Method in class org.neat4j.neat.core.NEATPopulation

updatePopulation(Chromosome[]) - Method in interface org.neat4j.neat.ga.core.Population

updateStructure(Chromosome) - Method in class org.neat4j.neat.core.NEATNetDescriptor

V

validSpecieList(int) - Method in class org.neat4j.neat.ga.core.Species

Provides a list of species that have not become extinct (or contains the champion individual)

values() - Method in class org.neat4j.neat.core.NEATNetOutput

values() - Method in interface org.neat4j.neat.data.core.NetworkOutput

values() - Method in class org.neat4j.neat.data.csv.CSVExpectedOutput

W

weights() - Method in class org.neat4j.neat.core.NEATNeuron

weights() - Method in interface org.neat4j.neat.nn.core.Neuron

X

XML - Static variable in class org.neat4j.neat.data.core.DataLoaderFactory

A B C D E F G H I K L M N O P R S T U V W X